One of the guides from this page should point you in the right direction. us.hitachi-solutions.com/.../setup-dynamics-365-server-side-synchronization-premise-exchange-online The scripts you need to run, including the CertificateReconfiguration.ps1 script can be found in the Tools folder under the CRM install directory on your server. Most likely the error you are getting is because you haven't run that script yet.
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